stop_lost [SO_0001578]

A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript.
Tags:

stop_lost

ID: SO_0001578

Class

A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript.

EBI term: Stop lost - In coding sequence, resulting in the loss of a stop codon.

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Classification

Alternative Names

Synonym Scope Reference
Seattleseq:stop-lost exact synonym VAR
VAT:removedStop exact synonym VAR
ANNOVAR:stoploss exact synonym //www.openbioinformatics.org/annovar/annovar_download.html
stop lost exact synonym //ensembl.org/info/docs/variation/index.html
Jannovar:stop_lost exact synonym //doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html
snpEff:STOP_LOST exact synonym VAR
stop codon lost exact synonym
VEP:stop_lost exact synonym VAR
VAAST:stop_lost exact synonym VAR
Seattleseq:stop-lost-near-splice related synonym VAR

References